SRR9007857

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Honey bee bulk RNA-seq with near-perfect library quality. Grade A (98/100) shows zero adapter contamination, no N content, and exceptional base quality (Q30 95.2%, mean 39), enabling single-nucleotide resolution in variant studies; duplication at 35.21% (scored 88/100) is the sole minor limitation. Highly recommended for comprehensive transcriptome and variant detection.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3143565067 reported

total reads 31657446 reported

n content pct 0 measured

pct q20 bases 98.3 measured

pct q30 bases 95.2 measured

gc content pct 36.9 measured

mean read length 99.3 measured

mean base quality 39 measured

adapter content pct 0 measured

duplication rate pct 35.21 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.2 measured ×1 100%

mean base quality 39 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 35.21 measured ×0.4 88%

QC cost 38 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0