SRR9007906

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk-RNA-seq from Apis mellifera (HiSeq 4000), grade A. Moderate duplication (40.22%) and zero adapter contamination indicate clean library preparation; high Q30 (95.4%) and base quality (39.1) across 28M reads support reliable expression quantification. Ready for publication-quality work.

Data type / assay

bulk-RNA-seq

Organism

Apis mellifera

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2865368105 reported

total reads 28895694 reported

n content pct 0 measured

pct q20 bases 98.4 measured

pct q30 bases 95.4 measured

gc content pct 37.4 measured

mean read length 99.2 measured

mean base quality 39.1 measured

adapter content pct 0 measured

duplication rate pct 40.22 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%

mean base quality 39.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 40.22 measured ×0.4 77%

QC cost 12 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0