SRR902195

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

88/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk-RNA-seq from Melitaea cinxia (HiSeq 2000), grade B. Duplication (62.39%) is elevated but partially offset by above-average Q30 (93.8%) and base quality (36.1) for this organism; this sample is higher-quality than most other Melitaea replicates. Reusable with standard deduplication.

Data type / assay

bulk-RNA-seq

Organism

Melitaea cinxia

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 703592866 reported

total reads 6966266 reported

n content pct 0.009 measured

pct q20 bases 96.2 measured

pct q30 bases 93.8 measured

gc content pct 26.8 measured

mean read length 101 measured

mean base quality 36.1 measured

adapter content pct 1.35 measured

duplication rate pct 62.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 88/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.8 measured ×1 100%

mean base quality 36.1 measured ×0.6 100%

adapter content pct 1.35 measured ×0.4 100%

duplication rate pct 62.39 measured ×0.4 28%

QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0