SRR902444

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (HiScanSQ, Melitaea cinxia). Grade B, limited by high duplication at 59.33% (scored 35/100). Good base quality (92.8% Q30) but duplication biases expression estimates—suitable for detection-level exploratory work only.

Data type / assay

bulk-RNA-seq

Organism

Melitaea cinxia

Instrument

Illumina HiScanSQ

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 231879400 reported

total reads 2318794 reported

n content pct 0.016 measured

pct q20 bases 97 measured

pct q30 bases 92.8 measured

gc content pct 25 measured

mean read length 100 measured

mean base quality 36.1 measured

adapter content pct 0.24 measured

duplication rate pct 59.33 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%

mean base quality 36.1 measured ×0.6 100%

adapter content pct 0.24 measured ×0.4 100%

duplication rate pct 59.33 measured ×0.4 35%

QC cost 1 min compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0