SRR9116311

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Bulk RNA-seq (BGISEQ-500, Aphis gossypii). Perfect 100/100 score with all metrics at or near maximum. No caveats; among the best datasets for reuse in any transcript quantification or variant discovery context.

Data type / assay

bulk-RNA-seq

Organism

Aphis gossypii

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 6241334600 reported

total reads 31206673 reported

n content pct 0.226 measured

pct q20 bases 97.8 measured

pct q30 bases 91.2 measured

gc content pct 41 measured

mean read length 100 measured

mean base quality 35.1 measured

adapter content pct 0 measured

duplication rate pct 21.92 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.2 measured ×1 100%

mean base quality 35.1 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 21.92 measured ×0.4 100%

QC cost 59 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0