SRR9117110

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Cimex lectularius (bedbug) bulk RNA-Seq on HiSeq 2500 spans 7.8 Gb with 38.9 million reads and good quality (97.8% Q20, 93.6% Q30), providing transcriptome coverage for this human-health pest insect. The dataset enables expression studies of blood-feeding, development, and pesticide resistance. Medical entomology and pest-biology studies can use this bedbug RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Cimex lectularius

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 7783979800 reported

total reads 38919899 reported

n content pct 0.047 measured

pct q20 bases 97.8 measured

pct q30 bases 93.6 measured

gc content pct 40.1 measured

mean read length 100 measured

mean base quality 36.4 measured

adapter content pct 0.34 measured

duplication rate pct 43.39 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.6 measured ×1 100%

mean base quality 36.4 measured ×0.6 100%

adapter content pct 0.34 measured ×0.4 100%

duplication rate pct 43.39 measured ×0.4 70%

QC cost 42 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0