Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR9124567

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Citrus maxima (pomelo) bulk RNA-Seq on HiSeq 4000 spans 10.5 Gb with 35 million reads and excellent quality (98.8% Q20, 96.5% Q30), providing clean transcriptome data for this large-fruited Citrus species. The dataset suits studies of citrus fruit development, disease resistance, and flavor-compound biosynthesis. Citrus genomics and breeding can use this high-quality pomelo RNA-seq.

Data type / assay
bulk-RNA-seq
Organism
Citrus maxima
Instrument
Illumina HiSeq 4000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 10539385200 reported
total reads 35131284 reported
n content pct 0.004 measured
pct q20 bases 98.8 measured
pct q30 bases 96.5 measured
gc content pct 44.5 measured
mean read length 150 measured
mean base quality 39.6 measured
adapter content pct 0.22 measured
duplication rate pct 32.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.5 measured ×1 100%
mean base quality 39.6 measured ×0.6 100%
adapter content pct 0.22 measured ×0.4 100%
duplication rate pct 32.1 measured ×0.4 95%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0