SRR9127777

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

Plant whole-genome sequencing with excellent long-read performance. Grade A (97/100) driven by very low duplication (10.64%, scored 92/100) and longer reads (150 bp mean), enabling robust unique mapping and structural accuracy; Q30 at 89.8% and minimal adapter (0.83%) support high-confidence variant calls. Excellent for assembly and structural variant studies.

Data type / assay

WGS

Organism

Citrus maxima

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10349486400 reported

total reads 34498288 reported

n content pct 0.001 measured

pct q20 bases 95.6 measured

pct q30 bases 89.8 measured

gc content pct 37.1 measured

mean read length 150 measured

mean base quality 36.8 measured

adapter content pct 0.83 measured

duplication rate pct 10.64 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89.8 measured ×1 99%

duplication rate pct 10.64 measured ×0.5 92%

adapter content pct 0.83 measured ×0.4 100%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0