SRR9127845

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

WGS from Citrus x aurantium with grade A (95/100). Exceptional quality across all dimensions: very low duplication (14.4%), outstanding Q30 (98.3%), long reads (133.2 bp), and zero N content make this an ideal reference dataset. Suitable for high-confidence genome assembly and complete variant discovery.

Data type / assay

WGS

Organism

Citrus x aurantium

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9339644415 reported

total reads 36721653 reported

n content pct 0 measured

pct q20 bases 99.1 measured

pct q30 bases 98.3 measured

gc content pct 39 measured

mean read length 133.2 measured

mean base quality 38.8 measured

adapter content pct 0.35 measured

duplication rate pct 14.37 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.3 measured ×1 100%

duplication rate pct 14.37 measured ×0.5 80%

adapter content pct 0.35 measured ×0.4 100%

QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0