Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9127852

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Citrus x aurantium (bitter orange) WGS dataset from the Illumina NovaSeq 6000 platform contains 23.4 million reads (6.37 billion bases) with outstanding quality (99.9% Q20, 99.4% Q30 bytes, zero N content). The exceptional base quality and modern platform enable highly confident genomic variant discovery in this citrus species. Search terms: citrus genomics, NovaSeq 6000, fruit crop sequencing, plant genome assembly, supporting horticultural genomics and breeding programs.

Data type / assay
WGS
Organism
Citrus x aurantium
Instrument
Illumina NovaSeq 6000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6366193139 reported
total reads 23381364 reported
n content pct 0 measured
pct q20 bases 99.9 measured
pct q30 bases 99.4 measured
gc content pct 36.6 measured
mean read length 142.3 measured
mean base quality 40.4 measured
adapter content pct 0 measured
duplication rate pct 10.66 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 99.4 measured ×1 100%
duplication rate pct 10.66 measured ×0.5 92%
adapter content pct 0 measured ×0.4 100%
QC cost 55 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0