SRR9127855

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

97/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This second Citrus x aurantium WGS on NovaSeq 6000 covers 8.3 Gb with 32.7 million reads and exceptional quality (99.2% Q20, 98.4% Q30, 0% N-content), providing replicate high-quality sequencing for this citrus species. Both C. x aurantium samples deliver NovaSeq-grade accuracy. Citrus comparative genomics can leverage both bitter-orange genomes.

Data type / assay

WGS

Organism

Citrus x aurantium

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 8337675849 reported

total reads 32746058 reported

n content pct 0 measured

pct q20 bases 99.2 measured

pct q30 bases 98.4 measured

gc content pct 38.7 measured

mean read length 135.3 measured

mean base quality 38.7 measured

adapter content pct 0.15 measured

duplication rate pct 11.52 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 97/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 98.4 measured ×1 100%

duplication rate pct 11.52 measured ×0.5 89%

adapter content pct 0.15 measured ×0.4 100%

QC cost 57 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0