SRR9129149

SRA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Citrus x limon (lemon) WGS dataset from the Illumina NovaSeq 6000 platform contains 45 million reads (13.51 billion bases) with excellent quality (97.4% Q20, 93.4% Q30 bytes). The high-quality modern sequencing enables comprehensive citrus genome analysis. Search terms: citrus genomics, NovaSeq, fruit crop WGS, plant breeding, genomic selection, supporting marker development for crop improvement programs.

Data type / assay

WGS

Organism

Citrus x limon

Instrument

Illumina NovaSeq 6000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 13507016700 reported

total reads 45023389 reported

n content pct 0.002 measured

pct q20 bases 97.4 measured

pct q30 bases 93.4 measured

gc content pct 37.9 measured

mean read length 150 measured

mean base quality 37.4 measured

adapter content pct 0.16 measured

duplication rate pct 12.64 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.4 measured ×1 100%

duplication rate pct 12.64 measured ×0.5 86%

adapter content pct 0.16 measured ×0.4 100%

QC cost 28 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0