SRR9141096

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Bemisia tabaci (sweetpotato whitefly) bulk RNA-Seq on HiSeq 2500 covers 1.2 Gb with 12 million reads and good quality (98.1% Q20, 93.5% Q30), providing transcriptome data for this globally important agricultural pest. The dataset enables expression studies of host plant interactions and pesticide resistance. Arthropod-pest research can use this whitefly RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Bemisia tabaci

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1212407900 reported

total reads 12124079 reported

n content pct 0.002 measured

pct q20 bases 98.1 measured

pct q30 bases 93.5 measured

gc content pct 39.6 measured

mean read length 100 measured

mean base quality 36.4 measured

adapter content pct 0.01 measured

duplication rate pct 14.03 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.5 measured ×1 100%

mean base quality 36.4 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 14.03 measured ×0.4 100%

QC cost 6 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0