SRR9160190

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

75/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Acyrthosiphon pisum (pea aphid) bulk RNA-Seq on HiSeq 2500 spans 5.6 Gb with 22 million reads and excellent quality (97.6% Q20, 94.7% Q30), providing clean transcriptome data for this widely-studied insect-host model. The dataset suits studying symbiosis, plant-insect interactions, and aphid development. Insect molecular biology and plant-pest studies can use this aphid RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Acyrthosiphon pisum

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 5564752704 reported

total reads 22082352 reported

n content pct 0.002 measured

pct q20 bases 97.6 measured

pct q30 bases 94.7 measured

gc content pct 47 measured

mean read length 126 measured

mean base quality 35.8 measured

adapter content pct 18.24 measured

duplication rate pct 56.59 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 75/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%

mean base quality 35.8 measured ×0.6 100%

adapter content pct 18.24 measured ×0.4 10%

duplication rate pct 56.59 measured ×0.4 41%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0