SRR9192374

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This WGS of Streptomyces venezuelae ATCC 10712 on HiSeq 2000 spans 1.88 Gb with 18.7 million reads and moderate quality (92.3% Q20, 84.7% Q30), showing the typical high-GC (72.3%) composition challenge in Streptomyces sequencing. The dataset supports antibiotic-producer genomics despite quality compromises. Actinomycete research can use this S. venezuelae WGS.

Data type / assay

WGS

Organism

Streptomyces venezuelae ATCC 10712

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1877399891 reported

total reads 18667122 reported

n content pct 0.014 measured

pct q20 bases 92.3 measured

pct q30 bases 84.7 measured

gc content pct 72.3 measured

mean read length 100.3 measured

mean base quality 33.9 measured

adapter content pct 0 measured

duplication rate pct 2.7 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.7 measured ×1 74%

duplication rate pct 2.7 measured ×0.5 100%

adapter content pct 0 measured ×0.4 100%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0