Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR921353

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

33/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Aedes aegypti (mosquito) RNA-Seq on AB SOLiD System 3.0 covers 981 Mb with 28 million reads but shows the platform's problematic Q30 (0%), indicating base-quality reporting limitations specific to SOLID color-space chemistry. The platform's older sequencing chemistry restricts utility despite the large read count. Contemporary mosquito studies should use updated platforms.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
AB SOLiD System 3.0
Platform
ABI_SOLID
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 980525385 reported
total reads 28015011 reported
n content pct 0 measured
pct q20 bases 97.2 measured
pct q30 bases 0 measured
gc content pct 0 measured
mean read length 36 measured
mean base quality 24.3 measured
adapter content pct 0 measured
duplication rate pct 10.14 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 33/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
mean base quality 24.3 measured ×0.6 0%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 10.14 measured ×0.4 100%
QC cost 14 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0