Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR921936

SRA first seen 2019

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This human bulk RNA-Seq on HiSeq 2000 spans 16.8 Gb with 83.9 million reads and good quality (97.5% Q20, 92.8% Q30), providing substantial human transcriptome coverage for disease-state, tissue-type, or treatment-condition studies. The large read count enables rare-transcript detection. Human gene-expression and medical-genomics studies can leverage this deep human RNA-seq.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 16793157800 reported
total reads 83965789 reported
n content pct 0.006 measured
pct q20 bases 97.5 measured
pct q30 bases 92.8 measured
gc content pct 49.6 measured
mean read length 101 measured
mean base quality 35.9 measured
adapter content pct 0.12 measured
duplication rate pct 22 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 92.8 measured ×1 100%
mean base quality 35.9 measured ×0.6 100%
adapter content pct 0.12 measured ×0.4 100%
duplication rate pct 22 measured ×0.4 100%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0