Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR923510

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq (cnidarian, HiSeq 2000), perfect score (A=100/100). Q30 at 93.3%, mean quality 36.1, low duplication (21.37%), and negligible adapter (0.23%) combine with large depth (71M reads). All metrics excellent; ideal for confident reuse.

Data type / assay
bulk-RNA-seq
Organism
Ectopleura larynx
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 14373912768 reported
total reads 71157984 reported
n content pct 0.005 measured
pct q20 bases 97.6 measured
pct q30 bases 93.3 measured
gc content pct 43.6 measured
mean read length 101 measured
mean base quality 36.1 measured
adapter content pct 0.23 measured
duplication rate pct 21.37 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.3 measured ×1 100%
mean base quality 36.1 measured ×0.6 100%
adapter content pct 0.23 measured ×0.4 100%
duplication rate pct 21.37 measured ×0.4 100%
QC cost 29 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 flagged mean score 68