SRR923825

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Aedes aegypti RNA-Seq on Illumina Genome Analyzer II covers 836 Mb with 22 million reads and good quality (99% Q20, 93.1% Q30), providing clean transcriptome data for this disease-vector mosquito on an earlier Illumina platform. The dataset suits studying dengue and other arbovirus-related gene expression. Medical entomology can use this mosquito RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 836304342 reported

total reads 22008009 reported

n content pct 0.047 measured

pct q20 bases 99 measured

pct q30 bases 93.1 measured

gc content pct 51.8 measured

mean read length 38 measured

mean base quality 35.6 measured

adapter content pct 0.29 measured

duplication rate pct 36.22 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 93.1 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0.29 measured ×0.4 100%

duplication rate pct 36.22 measured ×0.4 86%

QC cost 9 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0