SRR923842

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

100/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Aedes aegypti RNA-Seq on Genome Analyzer II covers 819 Mb with 21.5 million reads and exceptional quality (99.5% Q20, 96.3% Q30), representing the cleanest mosquito dataset in this collection. The five aggregated A. aegypti samples provide exceptional coverage depth. Comprehensive vector-biology studies can pool all Aedes transcriptomes for powerful expression atlases.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

Illumina Genome Analyzer II

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 818552148 reported

total reads 21540846 reported

n content pct 0.001 measured

pct q20 bases 99.5 measured

pct q30 bases 96.3 measured

gc content pct 50.1 measured

mean read length 38 measured

mean base quality 36.7 measured

adapter content pct 0.01 measured

duplication rate pct 26.38 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 100/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.3 measured ×1 100%

mean base quality 36.7 measured ×0.6 100%

adapter content pct 0.01 measured ×0.4 100%

duplication rate pct 26.38 measured ×0.4 100%

QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0