Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
← Dataset search

SRR923855

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This third Aedes aegypti RNA-Seq on Genome Analyzer II covers 690 Mb with 18.2 million reads and good quality (97.3% Q20, 89% Q30), providing another mosquito transcriptome sample. Multiple A. aegypti datasets enable extensive expression profiling. Mosquito vector biology can aggregate all Aedes transcriptomes.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
Illumina Genome Analyzer II
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 689802258 reported
total reads 18152691 reported
n content pct 0.013 measured
pct q20 bases 97.3 measured
pct q30 bases 89 measured
gc content pct 45.1 measured
mean read length 38 measured
mean base quality 34.3 measured
adapter content pct 0 measured
duplication rate pct 30.1 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 89 measured ×1 95%
mean base quality 34.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 30.1 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0