Corpus 1,275 assessed · 1,176 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74.1/100
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SRR9261108

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This whole genome sequencing dataset from a Salmonella enterica strain was generated using Illumina HiSeq 2500 short-read technology, delivering ~2.9M reads across 581M bases with excellent quality metrics (97.5% Q20 bases). The high GC content (51.7%) and minimal sequence artifacts (0.001% N content) make it well-suited for bacterial genome assembly, variant calling, and comparative genomic analysis of this enteric pathogen.

Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Larochelle
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 581603736 reported
total reads 2910096 reported
n content pct 0.001 measured
pct q20 bases 97.5 measured
pct q30 bases 95.4 measured
gc content pct 51.7 measured
mean read length 99.9 measured
mean base quality 37.7 measured
adapter content pct 0 measured
duplication rate pct 17.76 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.4 measured ×1 100%
duplication rate pct 17.76 measured ×0.5 70%
adapter content pct 0 measured ×0.4 100%
QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0