SRR927214

SRA

Provenance — who produced it, who reused it

Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

No linked papers found in the corpus yet.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Gallus gallus gallus

Instrument

Illumina HiSeq 2000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3039724750 reported

total reads 60794495 reported

n content pct 0.001 measured

pct q20 bases 98.8 measured

pct q30 bases 96.7 measured

gc content pct 52.4 measured

mean read length 50 measured

mean base quality 38 measured

adapter content pct 0 measured

duplication rate pct 87.88 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.7 measured ×1 100%

mean base quality 38 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 87.88 measured ×0.4 0%

QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0