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Provenance — who produced it, who reused it
Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
Reused by
1 further paper cites this accession but reuse could not be confirmed.
Deep data QC
92/100 · AStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
WGS
Organism
Salmonella enterica subsp. enterica serovar Bredeney
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok
yes
reported
total bases
358132538
reported
total reads
1788144
reported
n content pct
0.001
measured
pct q20 bases
97.1
measured
pct q30 bases
94.7
measured
gc content pct
52
measured
mean read length
100.1
measured
mean base quality
37.5
measured
adapter content pct
0
measured
duplication rate pct
17.49
measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 92/100
The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
94.7
measured
×1
100%
duplication rate pct
17.49
measured
×0.5
70%
adapter content pct
0
measured
×0.4
100%
QC cost
38 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0