Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9290553

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This WGS of Streptomyces prasinus on PacBio RS II delivers 779 Mb across 141k long reads with PacBio-typical Q-value reporting (0 for Q20/Q30), capturing the complex actinomycete genome structure at length-scale impossible with short reads. The long reads resolve repetitive antibiotic-biosynthesis gene clusters. Streptomyces genomics can use this long-read assembly.

Data type / assay
WGS
Organism
Streptomyces prasinus
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 778563556 reported
total reads 141028 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 66.9 measured
mean read length 5741.1 measured
mean base quality 9.7 measured
adapter content pct 0.02 measured
duplication rate pct 0.03 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0.03 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 15 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0