Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9290569

ENA first seen 2020

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

47/100 · F

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This PacBio RS II long-read WGS dataset for Streptomyces venezuelae provides 147.5K reads spanning 1.56B bases, enabling contiguous genome assembly and resolution of repetitive regions typical of actinobacterial chromosomes. Note that quality scores are unavailable (characteristic of raw PacBio circular consensus data), but the 0% N-content indicates high-fidelity mapping; this dataset is essential for complete genome reconstruction.

Data type / assay
WGS
Organism
Streptomyces venezuelae
Instrument
PacBio RS II
Platform
PACBIO_SMRT
Read type
long-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1562651143 reported
total reads 147457 reported
n content pct 0 measured
pct q20 bases 0 measured
pct q30 bases 0 measured
gc content pct 68.5 measured
mean read length 10180.1 measured
mean base quality 10 measured
adapter content pct 0.02 measured
duplication rate pct 0 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 47/100

The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 0 measured ×1 0%
duplication rate pct 0 measured ×0.5 100%
adapter content pct 0.02 measured ×0.4 100%
QC cost 33 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0