SRR9309938

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

82/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This bulk RNA-seq sample from the whitefly Trialeurodes vaporariorum was sequenced on Illumina HiSeq 2500, producing 12.2M reads across 3.05B bases with good quality (93.9% Q20, 88.4% Q30). The dataset supports transcriptome analysis of this agricultural pest insect.

Data type / assay

bulk-RNA-seq

Organism

Trialeurodes vaporariorum

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3050317500 reported

total reads 12201270 reported

n content pct 0.001 measured

pct q20 bases 93.9 measured

pct q30 bases 88.4 measured

gc content pct 29.3 measured

mean read length 125 measured

mean base quality 34.6 measured

adapter content pct 0.78 measured

duplication rate pct 68.69 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 82/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.4 measured ×1 92%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 0.78 measured ×0.4 100%

duplication rate pct 68.69 measured ×0.4 14%

QC cost 30 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0