Corpus 1,276 assessed · 1,177 scored · 644 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9331105

ENA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

63/100 · D

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Brassica cretica WGS on HiSeq 2500 spans 49.5 Gb with 82.4 million reads and good quality (89.8% Q20, 84.1% Q30), delivering substantial genome coverage for this wild Brassica relative useful in crop-improvement breeding. The large dataset depth supports variant discovery and breeding applications. Brassica crop research can use this wild-species WGS.

Data type / assay
WGS
Organism
Brassica cretica
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 49468997400 reported
total reads 82448329 reported
n content pct 0.001 measured
pct q20 bases 89.8 measured
pct q30 bases 84.1 measured
gc content pct 37.6 measured
mean read length 300 measured
mean base quality 34.7 measured
adapter content pct 26.81 measured
duplication rate pct 1.16 measured
How this grade was computed
Weighted mean of 3 scored metric(s) → 63/100

The D grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 84.1 measured ×1 71%
duplication rate pct 1.16 measured ×0.5 100%
adapter content pct 26.81 measured ×0.4 0%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0