Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR944031

ENA first seen 2018

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

RNA-Seq showing highest duplication among B-grade samples (93.56%, scored 0/100), offset by exceptionally strong Q30 (96.4%) and base quality (37.3). High duplication is the reuse caveat; elevated Q scores and moderate depth (17M reads) provide some resilience for quality-aware applications.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 578113356 reported
total reads 17003334 reported
n content pct 0.006 measured
pct q20 bases 99 measured
pct q30 bases 96.4 measured
gc content pct 44.9 measured
mean read length 34 measured
mean base quality 37.3 measured
adapter content pct 0 measured
duplication rate pct 93.56 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.4 measured ×1 100%
mean base quality 37.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 93.56 measured ×0.4 0%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0

Scientific quality

Based on hands-on reproduction of the papers that use this dataset. A reproducible paper that stands on this data is positive evidence; a flagged one is a prompt to look closer — never a verdict on the dataset itself without the evidence.

1 studies use it 1 reproduced mean score 89