SRR9603353

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

87/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This bulk RNA-seq dataset from the mosquito Aedes aegypti was sequenced on the BGISEQ-500 platform, generating 49.8M reads across 4.98B bases with high quality (97% Q20, 88.4% Q30) and exceptional cleanliness (0% N content). The alternative sequencing platform and large read count provide complementary transcriptome data for vector biology studies.

Data type / assay

bulk-RNA-seq

Organism

Aedes aegypti

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4979063600 reported

total reads 49790636 reported

n content pct 0 measured

pct q20 bases 97 measured

pct q30 bases 88.4 measured

gc content pct 41.2 measured

mean read length 100 measured

mean base quality 34.6 measured

adapter content pct 0 measured

duplication rate pct 56.3 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 87/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 88.4 measured ×1 92%

mean base quality 34.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 56.3 measured ×0.4 42%

QC cost 24 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0