Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9603432

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

92/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This RNA-seq dataset captures transcriptome-wide expression in the disease vector mosquito Aedes aegypti using NextSeq 500 sequencing, producing ~16.5M reads with high Q-score quality (98.2% Q20). Note the slightly elevated N content (0.164%) compared to typical runs; nevertheless, the dataset supports vector biology studies and can interrogate pathogen-vector interaction mechanisms.

Data type / assay
bulk-RNA-seq
Organism
Aedes aegypti
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1237314744 reported
total reads 16516119 reported
n content pct 0.164 measured
pct q20 bases 98.2 measured
pct q30 bases 97.5 measured
gc content pct 41.8 measured
mean read length 74.9 measured
mean base quality 35.1 measured
adapter content pct 0.01 measured
duplication rate pct 50.84 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 92/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.5 measured ×1 100%
mean base quality 35.1 measured ×0.6 100%
adapter content pct 0.01 measured ×0.4 100%
duplication rate pct 50.84 measured ×0.4 54%
QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0