Corpus 1,280 assessed · 1,181 scored · 646 reproduced ≥75 · 170 flagged ·∅ 74/100
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SRR9610263

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from the rice striped stem borer Chilo suppressalis was generated using Illumina HiSeq 2500, capturing 33.2M reads across 9.95B bases with good quality (96.5% Q20, 91.5% Q30). The high depth supports comprehensive analysis of pest insect transcriptomics, including stress responses and development-dependent gene expression.

Data type / assay
bulk-RNA-seq
Organism
Chilo suppressalis
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 9954071100 reported
total reads 33180237 reported
n content pct 0.006 measured
pct q20 bases 96.5 measured
pct q30 bases 91.5 measured
gc content pct 40.8 measured
mean read length 150 measured
mean base quality 38.1 measured
adapter content pct 0.86 measured
duplication rate pct 34.21 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.5 measured ×1 100%
mean base quality 38.1 measured ×0.6 100%
adapter content pct 0.86 measured ×0.4 100%
duplication rate pct 34.21 measured ×0.4 91%
QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0