SRR9610289

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This bulk RNA-seq dataset from the rice stem borer Chilo suppressalis was generated using Illumina HiSeq 2500, yielding 33.5M reads across 10B bases with excellent quality (96.5% Q20, 91.5% Q30). The high depth enables comprehensive analysis of pest insect transcriptomics and development.

Data type / assay

bulk-RNA-seq

Organism

Chilo suppressalis

Instrument

Illumina HiSeq 2500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 10040260500 reported

total reads 33467535 reported

n content pct 0.005 measured

pct q20 bases 96.5 measured

pct q30 bases 91.5 measured

gc content pct 41.3 measured

mean read length 150 measured

mean base quality 38.1 measured

adapter content pct 0.86 measured

duplication rate pct 34.96 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 91.5 measured ×1 100%

mean base quality 38.1 measured ×0.6 100%

adapter content pct 0.86 measured ×0.4 100%

duplication rate pct 34.96 measured ×0.4 89%

QC cost 27 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0