Corpus 1,273 assessed · 1,174 scored · 643 reproduced ≥75 · 169 flagged ·∅ 74.1/100
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SRR9622249

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

98/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq sample from Tribolium castaneum was sequenced on the NextSeq 500 instrument, generating 13.3M reads across 1B bases with solid quality (93.4% Q20, 90.2% Q30). The dataset provides transcriptome coverage sufficient for gene expression quantification in this genetic model beetle.

Data type / assay
bulk-RNA-seq
Organism
Tribolium castaneum
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1012078320 reported
total reads 13316820 reported
n content pct 0.001 measured
pct q20 bases 93.4 measured
pct q30 bases 90.2 measured
gc content pct 43.6 measured
mean read length 76 measured
mean base quality 33.6 measured
adapter content pct 0.99 measured
duplication rate pct 11.14 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 98/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.2 measured ×1 100%
mean base quality 33.6 measured ×0.6 93%
adapter content pct 0.99 measured ×0.4 100%
duplication rate pct 11.14 measured ×0.4 100%
QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0