SRR9637851

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

94/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This high-depth RNA-seq dataset from the desert locust Locusta migratoria was generated using Illumina HiSeq X Ten technology, capturing 32.8M reads across 9.84B bases with excellent quality (97.9% Q20, 94.5% Q30). The exceptional coverage supports detailed transcriptomic analysis of phase transitions, swarming behavior, and development in this major agricultural pest.

Data type / assay

bulk-RNA-seq

Organism

Locusta migratoria

Instrument

HiSeq X Ten

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 9836070900 reported

total reads 32786903 reported

n content pct 0.007 measured

pct q20 bases 97.9 measured

pct q30 bases 94.5 measured

gc content pct 43.9 measured

mean read length 150 measured

mean base quality 36 measured

adapter content pct 1.27 measured

duplication rate pct 44.95 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 94/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%

mean base quality 36 measured ×0.6 100%

adapter content pct 1.27 measured ×0.4 100%

duplication rate pct 44.95 measured ×0.4 67%

QC cost 21 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0