SRR9650809

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

99/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This bulk RNA-seq dataset from the Argentine ant Linepithema humile was generated using Illumina HiSeq 4000, capturing 21.2M reads across 4.24B bases with excellent quality (97.7% Q20, 94.3% Q30). The high-quality coverage enables transcriptome-wide analysis of this social insect, supporting studies of colony-level behavior and organization.

Data type / assay

bulk-RNA-seq

Organism

Linepithema humile

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 4244825600 reported

total reads 21224128 reported

n content pct 0.002 measured

pct q20 bases 97.7 measured

pct q30 bases 94.3 measured

gc content pct 40 measured

mean read length 100 measured

mean base quality 38.8 measured

adapter content pct 0 measured

duplication rate pct 31.4 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 99/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.3 measured ×1 100%

mean base quality 38.8 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 31.4 measured ×0.4 97%

QC cost 7 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0