SRR9650811

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Linepithema humile (Argentine ant) RNA-Seq on HiSeq 4000 covers 3.98 Gb with 19.9 million reads and good quality (97.9% Q20, 94.8% Q30), providing transcriptome data for this successful invasive ant species. The dataset suits studying invasion-associated gene expression and social behavior. Ant genomics and invasion ecology can use this invasive-species RNA-seq.

Data type / assay

bulk-RNA-seq

Organism

Linepithema humile

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 3980253800 reported

total reads 19901269 reported

n content pct 0.002 measured

pct q20 bases 97.9 measured

pct q30 bases 94.8 measured

gc content pct 38.6 measured

mean read length 100 measured

mean base quality 39 measured

adapter content pct 0 measured

duplication rate pct 40.84 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.8 measured ×1 100%

mean base quality 39 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 40.84 measured ×0.4 76%

QC cost 8 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0