SRR9659235

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

83/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This miRNA-Seq dataset from Drosophila simulans was generated using Illumina HiSeq 4000, yielding 20.1M small reads across 1B bases with excellent quality (97.6% Q20, 95.5% Q30). The high-quality small-RNA data enable detailed microRNA profiling and discovery in this model organism.

Data type / assay

bulk-RNA-seq

Organism

Drosophila simulans

Instrument

Illumina HiSeq 4000

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1003517200 reported

total reads 20070344 reported

n content pct 0.001 measured

pct q20 bases 97.6 measured

pct q30 bases 95.5 measured

gc content pct 50.5 measured

mean read length 50 measured

mean base quality 35.6 measured

adapter content pct 0 measured

duplication rate pct 79.86 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 83/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 95.5 measured ×1 100%

mean base quality 35.6 measured ×0.6 100%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 79.86 measured ×0.4 0%

QC cost 25 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0