Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9676032

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

96/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Osmia lignaria (blue orchard bee) bulk RNA-Seq dataset from the NextSeq 500 platform contains 34.2 million short reads (8.72 billion bases) with very good quality (94.6% Q20, 90.7% Q30 bytes). The high depth and quality enable comprehensive transcriptome profiling of this solitary bee pollinator. Search terms: bee transcriptomics, NextSeq 500, pollinator genomics, solitary bee biology, supporting studies of reproduction, behavior, and ecological adaptation.

Data type / assay
bulk-RNA-seq
Organism
Osmia lignaria
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 8715454854 reported
total reads 34206059 reported
n content pct 0.035 measured
pct q20 bases 94.6 measured
pct q30 bases 90.7 measured
gc content pct 43 measured
mean read length 127.1 measured
mean base quality 33.9 measured
adapter content pct 0.59 measured
duplication rate pct 39.71 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 96/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 90.7 measured ×1 100%
mean base quality 33.9 measured ×0.6 98%
adapter content pct 0.59 measured ×0.4 100%
duplication rate pct 39.71 measured ×0.4 78%
QC cost 22 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0