SRR9678209

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Danaus plexippus

Instrument

BGISEQ-500

Platform

BGISEQ

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 1232382500 reported

total reads 24647650 reported

n content pct 0 measured

pct q20 bases 99.2 measured

pct q30 bases 94.5 measured

gc content pct 42.8 measured

mean read length 50 measured

mean base quality 35.9 measured

adapter content pct 0.02 measured

duplication rate pct 59.17 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.5 measured ×1 100%

mean base quality 35.9 measured ×0.6 100%

adapter content pct 0.02 measured ×0.4 100%

duplication rate pct 59.17 measured ×0.4 35%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0