Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
← Dataset search

SRR9691965

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This bulk RNA-seq dataset from the Drosophila species Scaptodrosophila lebanonensis was generated on NextSeq 500, producing 10.5M reads across 1.59B bases. Note that quality metrics are moderate (89.8% Q20, 83% Q30), placing this at the lower end of typical RNA-seq; preprocessing and quality filtering are recommended before transcript quantification in this lesser-studied dipteran model.

Data type / assay
bulk-RNA-seq
Organism
Scaptodrosophila lebanonensis
Instrument
NextSeq 500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1585665798 reported
total reads 10501098 reported
n content pct 0 measured
pct q20 bases 89.8 measured
pct q30 bases 83 measured
gc content pct 45 measured
mean read length 151 measured
mean base quality 32.3 measured
adapter content pct 9.96 measured
duplication rate pct 30.29 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83 measured ×1 65%
mean base quality 32.3 measured ×0.6 72%
adapter content pct 9.96 measured ×0.4 56%
duplication rate pct 30.29 measured ×0.4 99%
QC cost 13 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0