Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR9705249

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

86/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Apis mellifera bulk RNA-Seq dataset from the Illumina HiSeq 2500 platform contains 14.6 million short reads (743.1 million bases) with excellent quality (98.9% Q20, 97.1% Q30 bytes, 0.015% N content). The clean, high-quality reads enable sensitive expression profiling of honey bee tissues. Search terms: honey bee transcriptomics, HiSeq 2500, social insect biology, insect behavior genomics, supporting studies of gene regulation in eusocial insects.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 743054808 reported
total reads 14647016 reported
n content pct 0.015 measured
pct q20 bases 98.9 measured
pct q30 bases 97.1 measured
gc content pct 28.2 measured
mean read length 50.7 measured
mean base quality 39.3 measured
adapter content pct 0 measured
duplication rate pct 66.59 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 86/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.1 measured ×1 100%
mean base quality 39.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 66.59 measured ×0.4 19%
QC cost 16 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0