Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9705253

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

93/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Apis mellifera (honey bee) bulk RNA-Seq dataset was sequenced on the Illumina HiSeq 2500 platform, yielding 9.2 million reads (464.7 million bases) with very high quality (98.9% Q20, 96.9% Q30 bases, 0.012% N content). The dataset is findable by insect transcriptomics, HiSeq 2500, and social insect biology. The exceptionally clean reads enable accurate expression profiling and transcript discovery in this model organism for behavioral and developmental studies.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 464685065 reported
total reads 9167335 reported
n content pct 0.012 measured
pct q20 bases 98.9 measured
pct q30 bases 96.9 measured
gc content pct 31.9 measured
mean read length 50.7 measured
mean base quality 39.3 measured
adapter content pct 0 measured
duplication rate pct 48.13 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 93/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.9 measured ×1 100%
mean base quality 39.3 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 48.13 measured ×0.4 60%
QC cost 37 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0