Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9705254

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

90/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Apis mellifera bulk RNA-Seq dataset from the Illumina HiSeq 2500 platform contains 20.6 million short reads (1.05 billion bases) with excellent quality (98.6% Q20, 96.2% Q30 bytes, 0.01% N content). The clean, high-quality reads enable sensitive detection of gene expression in honey bee tissues. Search terms: honey bee transcriptomics, HiSeq 2500, social insect behavior, developmental biology, supporting studies of gene regulation in eusocial organisms.

Data type / assay
bulk-RNA-seq
Organism
Apis mellifera
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1046965643 reported
total reads 20643996 reported
n content pct 0.01 measured
pct q20 bases 98.6 measured
pct q30 bases 96.2 measured
gc content pct 30.3 measured
mean read length 50.7 measured
mean base quality 39 measured
adapter content pct 0 measured
duplication rate pct 56.18 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 90/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 96.2 measured ×1 100%
mean base quality 39 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 56.18 measured ×0.4 42%
QC cost 26 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0