Corpus 1,285 assessed · 1,186 scored · 647 reproduced ≥75 · 174 flagged ·∅ 73.9/100
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SRR970561

ENA first seen 2016

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

71/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Homo sapiens bulk RNA-Seq dataset from the Illumina HiSeq 2000 platform contains 110.4 million short reads (5.63 billion bases) with high quality (91.2% Q20, 83.7% Q30 bases, 0.012% N content). The large read depth from HiSeq 2000 enables comprehensive human transcriptome profiling and is searchable by human gene expression, clinical RNA-Seq, and tissue-specific studies. The dataset offers sufficient coverage for both highly and moderately expressed gene detection.

Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 5630286678 reported
total reads 110397778 reported
n content pct 0.012 measured
pct q20 bases 91.2 measured
pct q30 bases 83.7 measured
gc content pct 54.7 measured
mean read length 51 measured
mean base quality 33.2 measured
adapter content pct 0 measured
duplication rate pct 63.7 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 71/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 83.7 measured ×1 69%
mean base quality 33.2 measured ×0.6 87%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 63.7 measured ×0.4 25%
QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0