SRR9724652

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

77/100 · C

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

Data type / assay

bulk-RNA-seq

Organism

Heliconius numata

Instrument

Illumina HiSeq 1500

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 2010370887 reported

total reads 39419037 reported

n content pct 0.017 measured

pct q20 bases 89.3 measured

pct q30 bases 82.8 measured

gc content pct 46.5 measured

mean read length 51 measured

mean base quality 33.3 measured

adapter content pct 0 measured

duplication rate pct 42.79 measured

How this grade was computed

Weighted mean of 4 scored metric(s) → 77/100

The C grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 82.8 measured ×1 64%

mean base quality 33.3 measured ×0.6 88%

adapter content pct 0 measured ×0.4 100%

duplication rate pct 42.79 measured ×0.4 72%

QC cost 35 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0