Corpus 1,272 assessed · 1,173 scored · 643 reproduced ≥75 · 168 flagged ·∅ 74.1/100
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SRR9724658

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

85/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Heliconius numata bulk RNA-Seq dataset from the Illumina HiSeq 1500 platform contains 37.3 million short reads (1.90 billion bases) with excellent quality (91.2% Q20, 85.2% Q30 bytes). The high read depth enables robust gene expression profiling of this Neotropical butterfly model. Search terms: lepidopteran transcriptomics, HiSeq 1500, butterfly biology, wing pattern development, Heliconius genomics, supporting developmental and evolutionary studies.

Data type / assay
bulk-RNA-seq
Organism
Heliconius numata
Instrument
Illumina HiSeq 1500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 1902485844 reported
total reads 37303644 reported
n content pct 0.004 measured
pct q20 bases 91.2 measured
pct q30 bases 85.2 measured
gc content pct 47.1 measured
mean read length 51 measured
mean base quality 34.1 measured
adapter content pct 0 measured
duplication rate pct 44.84 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 85/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 85.2 measured ×1 76%
mean base quality 34.1 measured ×0.6 100%
adapter content pct 0 measured ×0.4 100%
duplication rate pct 44.84 measured ×0.4 67%
QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0