SRR974871

ENA first seen 2017

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

89/100 · B

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means

claude:haiku

This Listeria monocytogenes WGS dataset from the Illumina MiSeq platform contains 535,110 reads (157.8 million bases) with excellent quality (98.2% Q20, 97.7% Q30 bytes). The high-quality bacterial sequencing enables confident genome assembly. Search terms: bacterial WGS, Listeria genomics, MiSeq, food pathogen sequencing, public health microbiology, applicable to outbreak investigation and pathogen surveillance.

Data type / assay

WGS

Organism

Listeria monocytogenes

Instrument

Illumina MiSeq

Platform

ILLUMINA

Read type

short-read

Files available

FASTQ (raw reads)

N numbers (samples, groups)

1 runs

Metrics (value · how obtained)

checksum ok yes reported

total bases 157821748 reported

total reads 535110 reported

n content pct 0.02 measured

pct q20 bases 98.2 measured

pct q30 bases 97.7 measured

gc content pct 38.8 measured

mean read length 147.5 measured

mean base quality 37.6 measured

adapter content pct 0 measured

duplication rate pct 21.37 measured

How this grade was computed

Weighted mean of 3 scored metric(s) → 89/100

The B grade is a transparent weighted average. Each metric below scored from 0–100% against the published WGS thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 97.7 measured ×1 100%

duplication rate pct 21.37 measured ×0.5 58%

adapter content pct 0 measured ×0.4 100%

QC cost 32 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0