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SRR975574
SRAProvenance — who produced it, who reused it
Linked to 0 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.
No linked papers found in the corpus yet.
Deep data QC
40/100 · FStandardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured
Data type / assay
bulk-RNA-seq
Organism
Homo sapiens
Instrument
Illumina HiSeq 2000
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
gc sd
11.18
measured
checksum ok
yes
reported
total bases
6492661982
reported
total reads
32141891
reported
n content pct
0.013
measured
pct q20 bases
80.4
measured
pct q30 bases
70.9
measured
pct reads q30
63.2
measured
sampled bases
57964910
measured
sampled reads
573910
measured
gc content pct
52.4
measured
polyg tail pct
0.05
measured
read length sd
0
measured
quality dropoff
-13.7
measured
read length max
101
measured
read length min
101
measured
read length n50
101
measured
max base quality
41
measured
mean read length
101
measured
max n pct per pos
0.215
measured
mean base quality
29.2
measured
pct reads lt 100bp
0
measured
read length median
101
measured
adapter content pct
0.61
measured
median read quality
33.4
measured
duplication rate pct
18.39
measured
overrepresented top pct
0.05
measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 40/100
The F grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.
pct q30 bases
70.9
measured
×1
5%
mean base quality
29.2
measured
×0.6
20%
adapter content pct
0.61
measured
×0.4
100%
duplication rate pct
18.39
measured
×0.4
100%
QC cost
18 s compute
measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0