Corpus 1,284 assessed · 1,185 scored · 647 reproduced ≥75 · 173 flagged ·∅ 73.9/100
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SRR9831078

SRA first seen 2021

Provenance — who produced it, who reused it

Linked to 1 papers in the literature. Roles are inferred factual signals (who deposited the data vs who reused it), with counts — never a judgement about any author.

Reused by

1 further paper cites this accession but reuse could not be confirmed.

Deep data QC

95/100 · A

Standardized, field-standard QC computed by touching the data — every metric states how it was obtained · evidence: measured

What this means
claude:haiku

This Myzus persicae bulk RNA-Seq dataset from the Illumina HiSeq 2500 platform contains 31.3 million short reads (6.26 billion bases) with excellent quality (97.4% Q20, 94.7% Q30 bytes, 0.007% N content). The high depth and outstanding base quality enable sensitive expression profiling of this economically important aphid pest. Search terms: aphid transcriptomics, HiSeq 2500, host-plant interactions, insecticide resistance genes, applicable to studies of pest biology and agriculture.

Data type / assay
bulk-RNA-seq
Organism
Myzus persicae
Instrument
Illumina HiSeq 2500
Platform
ILLUMINA
Read type
short-read
Files available
FASTQ (raw reads)
N numbers (samples, groups)
1 runs
Metrics (value · how obtained)
checksum ok yes reported
total bases 6259717400 reported
total reads 31298587 reported
n content pct 0.007 measured
pct q20 bases 97.4 measured
pct q30 bases 94.7 measured
gc content pct 37.8 measured
mean read length 100 measured
mean base quality 36.5 measured
adapter content pct 1.24 measured
duplication rate pct 44.64 measured
How this grade was computed
Weighted mean of 4 scored metric(s) → 95/100

The A grade is a transparent weighted average. Each metric below scored from 0–100% against the published bulk-RNA-seq thresholds, weighted by its importance; nothing is hidden or subjective.

pct q30 bases 94.7 measured ×1 100%
mean base quality 36.5 measured ×0.6 100%
adapter content pct 1.24 measured ×0.4 100%
duplication rate pct 44.64 measured ×0.4 68%
QC cost 10 s compute

measured = computed from the data · extrapolated/reported = derived or from the repository · dq-1.0